J3_6Y7C_012

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUAG*CUUACG*CAAAG

Length

15 nucleotides

Bulged bases

6Y7C|1|2|A|1093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|C|1037
6Y7C|1|2|U|1038
6Y7C|1|2|A|1039
6Y7C|1|2|G|1040
*
6Y7C|1|2|C|1078
6Y7C|1|2|U|1079
6Y7C|1|2|U|1080
6Y7C|1|2|A|1081
6Y7C|1|2|C|1082
6Y7C|1|2|G|1083
*
6Y7C|1|2|C|1090
6Y7C|1|2|A|1091
6Y7C|1|2|A|1092
6Y7C|1|2|A|1093
6Y7C|1|2|G|1094

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain A

40S ribosomal protein S0-A

Chain V

40S ribosomal protein S21-A

Chain W

40S ribosomal protein S22-A

Chain b

40S ribosomal protein S27-A