J3_6Y7C_013

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACCACCAG*CUAGUAA*UGAUUACGUCCCU

Length

28 nucleotides

Bulged bases

6Y7C|1|2|C|1159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|A|1157
6Y7C|1|2|C|1158
6Y7C|1|2|C|1159
6Y7C|1|2|A|1160
6Y7C|1|2|C|1161
6Y7C|1|2|C|1162
6Y7C|1|2|A|1163
6Y7C|1|2|G|1164
*
6Y7C|1|2|C|1581
6Y7C|1|2|U|1582
6Y7C|1|2|A|1583
6Y7C|1|2|G|1584
6Y7C|1|2|U|1585
6Y7C|1|2|A|1586
6Y7C|1|2|A|1587
*
6Y7C|1|2|U|1609
6Y7C|1|2|G|1610
6Y7C|1|2|A|1611
6Y7C|1|2|U|1612
6Y7C|1|2|U|1613
6Y7C|1|2|A|1614
6Y7C|1|2|C|1615
6Y7C|1|2|G|1616
6Y7C|1|2|U|1617
6Y7C|1|2|C|1618
6Y7C|1|2|C|1619
6Y7C|1|2|C|1620
6Y7C|1|2|U|1621

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain c

40S ribosomal protein S28-A

Chain d

40S ribosomal protein S29-A

Chain l

Serine/threonine-protein kinase RIO2