J3_6Y7C_014

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUGGA*UAC*GGAAUUC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|G|1165
6Y7C|1|2|A|1166
6Y7C|1|2|G|1167
6Y7C|1|2|U|1168
6Y7C|1|2|G|1169
6Y7C|1|2|G|1170
6Y7C|1|2|A|1171
*
6Y7C|1|2|U|1468
6Y7C|1|2|A|1469
6Y7C|1|2|C|1470
*
6Y7C|1|2|G|1574
6Y7C|1|2|G|1575
6Y7C|1|2|A|1576
6Y7C|1|2|A|1577
6Y7C|1|2|U|1578
6Y7C|1|2|U|1579
6Y7C|1|2|C|1580

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain T

40S ribosomal protein S19-A

Chain l

Serine/threonine-protein kinase RIO2