J3_6Y7C_015

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGUCCAGAC*GGGUGGUGGUGCAUG*CUGUGAUGCCCUUAGACGUUCU

Length

47 nucleotides

Bulged bases

6Y7C|1|2|U|1269, 6Y7C|1|2|U|1432, 6Y7C|1|2|U|1434, 6Y7C|1|2|G|1435, 6Y7C|1|2|A|1436, 6Y7C|1|2|A|1444, 6Y7C|1|2|G|1445, 6Y7C|1|2|A|1446, 6Y7C|1|2|G|1448

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|A|1211
6Y7C|1|2|G|1212
6Y7C|1|2|G|1213
6Y7C|1|2|U|1214
6Y7C|1|2|C|1215
6Y7C|1|2|C|1216
6Y7C|1|2|A|1217
6Y7C|1|2|G|1218
6Y7C|1|2|A|1219
6Y7C|1|2|C|1220
*
6Y7C|1|2|G|1263
6Y7C|1|2|G|1264
6Y7C|1|2|G|1265
6Y7C|1|2|U|1266
6Y7C|1|2|G|1267
6Y7C|1|2|G|1268
6Y7C|1|2|U|1269
6Y7C|1|2|G|1270
6Y7C|1|2|G|1271
6Y7C|1|2|U|1272
6Y7C|1|2|G|1273
6Y7C|1|2|C|1274
6Y7C|1|2|A|1275
6Y7C|1|2|U|1276
6Y7C|1|2|G|1277
*
6Y7C|1|2|C|1431
6Y7C|1|2|U|1432
6Y7C|1|2|G|1433
6Y7C|1|2|U|1434
6Y7C|1|2|G|1435
6Y7C|1|2|A|1436
6Y7C|1|2|U|1437
6Y7C|1|2|G|1438
6Y7C|1|2|C|1439
6Y7C|1|2|C|1440
6Y7C|1|2|C|1441
6Y7C|1|2|U|1442
6Y7C|1|2|U|1443
6Y7C|1|2|A|1444
6Y7C|1|2|G|1445
6Y7C|1|2|A|1446
6Y7C|1|2|C|1447
6Y7C|1|2|G|1448
6Y7C|1|2|U|1449
6Y7C|1|2|U|1450
6Y7C|1|2|C|1451
6Y7C|1|2|U|1452

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain d

40S ribosomal protein S29-A

Chain i

Essential nuclear protein 1

Chain t

Ribosome biogenesis protein TSR1