J3_6Y7C_016

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCGUUCUUAG*CGAGAC*GCAAUAACAGG

Length

27 nucleotides

Bulged bases

6Y7C|1|2|U|1285, 6Y7C|1|2|U|1286, 6Y7C|1|2|A|1287, 6Y7C|1|2|A|1421, 6Y7C|1|2|A|1427

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|C|1279
6Y7C|1|2|C|1280
6Y7C|1|2|G|1281
6Y7C|1|2|U|1282
6Y7C|1|2|U|1283
6Y7C|1|2|C|1284
6Y7C|1|2|U|1285
6Y7C|1|2|U|1286
6Y7C|1|2|A|1287
6Y7C|1|2|G|1288
*
6Y7C|1|2|C|1327
6Y7C|1|2|G|1328
6Y7C|1|2|A|1329
6Y7C|1|2|G|1330
6Y7C|1|2|A|1331
6Y7C|1|2|C|1332
*
6Y7C|1|2|G|1419
6Y7C|1|2|C|1420
6Y7C|1|2|A|1421
6Y7C|1|2|A|1422
6Y7C|1|2|U|1423
6Y7C|1|2|A|1424
6Y7C|1|2|A|1425
6Y7C|1|2|C|1426
6Y7C|1|2|A|1427
6Y7C|1|2|G|1428
6Y7C|1|2|G|1429

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain R

40S ribosomal protein S17-A

Chain d

40S ribosomal protein S29-A