J3_6Y7C_017

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACC*GGACUAUC*GAUGGAAGUUU

Length

22 nucleotides

Bulged bases

6Y7C|1|2|G|1387, 6Y7C|1|2|U|1413, 6Y7C|1|2|U|1414

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|A|1337
6Y7C|1|2|C|1338
6Y7C|1|2|C|1339
*
6Y7C|1|2|G|1386
6Y7C|1|2|G|1387
6Y7C|1|2|A|1388
6Y7C|1|2|C|1389
6Y7C|1|2|U|1390
6Y7C|1|2|A|1391
6Y7C|1|2|U|1392
6Y7C|1|2|C|1393
*
6Y7C|1|2|G|1405
6Y7C|1|2|A|1406
6Y7C|1|2|U|1407
6Y7C|1|2|G|1408
6Y7C|1|2|G|1409
6Y7C|1|2|A|1410
6Y7C|1|2|A|1411
6Y7C|1|2|G|1412
6Y7C|1|2|U|1413
6Y7C|1|2|U|1414
6Y7C|1|2|U|1415

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain R

40S ribosomal protein S17-A