J3_6Y7C_018

3D structure

PDB id

6Y7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACUG*CGUGCUGGGGAUA*UUCAACGAG

Length

27 nucleotides

Bulged bases

6Y7C|1|2|U|1473, 6Y7C|1|2|G|1534, 6Y7C|1|2|C|1537, 6Y7C|1|2|G|1539, 6Y7C|1|2|G|1572, 6Y7C|1|2|A|1573

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y7C|1|2|C|1470
6Y7C|1|2|A|1471
6Y7C|1|2|C|1472
6Y7C|1|2|U|1473
6Y7C|1|2|G|1474
*
6Y7C|1|2|C|1533
6Y7C|1|2|G|1534
6Y7C|1|2|U|1535
6Y7C|1|2|G|1536
6Y7C|1|2|C|1537
6Y7C|1|2|U|1538
6Y7C|1|2|G|1539
6Y7C|1|2|G|1540
6Y7C|1|2|G|1541
6Y7C|1|2|G|1542
6Y7C|1|2|A|1543
6Y7C|1|2|U|1544
6Y7C|1|2|A|1545
*
6Y7C|1|2|U|1566
6Y7C|1|2|U|1567
6Y7C|1|2|C|1568
6Y7C|1|2|A|1569
6Y7C|1|2|A|1570
6Y7C|1|2|C|1571
6Y7C|1|2|G|1572
6Y7C|1|2|A|1573
6Y7C|1|2|G|1574

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A

Chain Z

40S ribosomal protein S25-A

Chain l

Serine/threonine-protein kinase RIO2