J3_6YAL_013
3D structure
- PDB id
- 6YAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage initiation complex with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 6YAL|1|2|U|1530, 6YAL|1|2|G|1598
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YAL_013 not in the Motif Atlas
- Homologous match to J3_4V88_041
- Geometric discrepancy: 0.1846
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
6YAL|1|2|C|1527
6YAL|1|2|A|1528
6YAL|1|2|C|1529
6YAL|1|2|U|1530
6YAL|1|2|G|1531
*
6YAL|1|2|C|1592
6YAL|1|2|G|1593
6YAL|1|2|U|1594
6YAL|1|2|G|1595
6YAL|1|2|A|1596
6YAL|1|2|U|1597
6YAL|1|2|G|1598
6YAL|1|2|G|1599
*
6YAL|1|2|C|1630
6YAL|1|2|G|1631
6YAL|1|2|A|1632
6YAL|1|2|G|1633
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S Ribosomal protein uS7
- Chain U
- 40S ribosomal protein uS13
- Chain V
- 40S ribosomal protein eS19
- Chain n
- 40S ribosomal protein eS25
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