J3_6YAL_014

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6YAL|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YAL_014 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1036

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6YAL|1|2|A|40
6YAL|1|2|G|41
6YAL|1|2|A|42
6YAL|1|2|U|43
6YAL|1|2|U|44
6YAL|1|2|A|45
6YAL|1|2|A|46
6YAL|1|2|G|47
*
6YAL|1|2|C|469
6YAL|1|2|G|470
6YAL|1|2|C|471
6YAL|1|2|G|472
6YAL|1|2|C|473
6YAL|1|2|A|474
6YAL|1|2|A|475
6YAL|1|2|A|476
6YAL|1|2|U|477
*
6YAL|1|2|A|502
6YAL|1|2|G|503
6YAL|1|2|U|504

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein uS12

Chain k

ATP-binding cassette sub-family E member 1 (ABCE1)