J3_6YAN_002

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YAN_002 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.1969

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.1

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

2

Unit IDs

6YAN|1|2|A|812
6YAN|1|2|G|813
6YAN|1|2|A|814
6YAN|1|2|G|815
*
6YAN|1|2|C|825
6YAN|1|2|A|826
6YAN|1|2|G|827
*
6YAN|1|2|C|839
6YAN|1|2|U|840
6YAN|1|2|G|841
6YAN|1|2|G|842
6YAN|1|2|A|843
6YAN|1|2|U|844

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S9 (Predicted)

Chain a

40S ribosomal protein S24