J3_6YAN_009
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YAN_009 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.2412
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6YAN|1|2|U|1336
6YAN|1|2|C|1337
6YAN|1|2|U|1338
6YAN|1|2|U|1339
6YAN|1|2|A|1340
6YAN|1|2|G|1341
*
6YAN|1|2|C|1380
6YAN|1|2|G|1381
6YAN|1|2|A|1382
6YAN|1|2|G|1383
6YAN|1|2|A|1384
6YAN|1|2|C|1385
*
6YAN|1|2|G|1477
6YAN|1|2|C|1478
6YAN|1|2|A|1479
6YAN|1|2|A|1480
6YAN|1|2|U|1481
6YAN|1|2|A|1482
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein uS5
- Chain F
- Ribosomal protein S3
- Chain S
- ribosomal protein uS9
- Chain T
- ribosomal protein eS17
- Chain W
- Ribosomal_S10 domain-containing protein
- Chain e
- ribosomal protein uS14
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