J3_6YAN_010

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YAN_010 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.157

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6YAN|1|2|U|1346
6YAN|1|2|G|1347
*
6YAN|1|2|U|1356
6YAN|1|2|G|1357
6YAN|1|2|U|1358
6YAN|1|2|C|1359
*
6YAN|1|2|G|1371
6YAN|1|2|A|1372
6YAN|1|2|U|1373
6YAN|1|2|A|1374
6YAN|1|2|A|1375

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein SA

Chain E

40S ribosomal protein uS5

Chain T

ribosomal protein eS17