J3_6YAN_013

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6YAN|1|2|A|45, 6YAN|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YAN_013 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0958

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6YAN|1|2|A|40
6YAN|1|2|G|41
6YAN|1|2|A|42
6YAN|1|2|U|43
6YAN|1|2|U|44
6YAN|1|2|A|45
6YAN|1|2|A|46
6YAN|1|2|G|47
*
6YAN|1|2|C|469
6YAN|1|2|G|470
6YAN|1|2|C|471
6YAN|1|2|G|472
6YAN|1|2|C|473
6YAN|1|2|A|474
6YAN|1|2|A|475
6YAN|1|2|A|476
6YAN|1|2|U|477
*
6YAN|1|2|A|502
6YAN|1|2|G|503
6YAN|1|2|U|504

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Z

40S ribosomal protein uS12