J3_6YBW_001

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

6YBW|1|A|C|483

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YBW_001 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0891

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6YBW|1|A|A|40
6YBW|1|A|G|41
*
6YBW|1|A|C|481
6YBW|1|A|G|482
6YBW|1|A|C|483
6YBW|1|A|A2M|484
6YBW|1|A|A|485
6YBW|1|A|A|486
6YBW|1|A|U|487
*
6YBW|1|A|A|512
6YBW|1|A|G|513
6YBW|1|A|U|514

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain E

40S ribosomal protein S23

Chain z

Eukaryotic translation initiation factor 3 subunit J