J3_6YBW_005

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

6YBW|1|A|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YBW|1|A|C|1094
6YBW|1|A|C|1095
6YBW|1|A|G|1096
*
6YBW|1|A|U|1136
6YBW|1|A|U|1137
6YBW|1|A|C|1138
6YBW|1|A|C|1139
6YBW|1|A|G|1140
*
6YBW|1|A|C|1147
6YBW|1|A|A|1148
6YBW|1|A|A|1149
6YBW|1|A|A|1150
6YBW|1|A|G|1151

Current chains

Chain A

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S27

Chain J

40S ribosomal protein S15a

Chain K

40S ribosomal protein S21

Chain N

40S ribosomal protein SA

Chain Q

40S ribosomal protein S26