J3_6YBW_006
3D structure
- PDB id
- 6YBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a human 48S translational initiation complex - 40S body
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 6YBW|1|A|A|46
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YBW_006 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0654
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6YBW|1|A|A|40
6YBW|1|A|G|41
6YBW|1|A|A|42
6YBW|1|A|U|43
6YBW|1|A|U|44
6YBW|1|A|A|45
6YBW|1|A|A|46
6YBW|1|A|G|47
*
6YBW|1|A|C|479
6YBW|1|A|G|480
6YBW|1|A|C|481
6YBW|1|A|G|482
6YBW|1|A|C|483
6YBW|1|A|A2M|484
6YBW|1|A|A|485
6YBW|1|A|A|486
6YBW|1|A|U|487
*
6YBW|1|A|A|512
6YBW|1|A|G|513
6YBW|1|A|U|514
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain D
- 40S ribosomal protein S9
- Chain E
- 40S ribosomal protein S23
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
Coloring options: