J3_6YDP_002
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAUU*AUAAAAAU*AGU
- Length
- 15 nucleotides
- Bulged bases
- 6YDP|1|AA|A|42
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|AA|A|41
6YDP|1|AA|A|42
6YDP|1|AA|U|43
6YDP|1|AA|U|44
*
6YDP|1|AA|A|179
6YDP|1|AA|U|180
6YDP|1|AA|A|181
6YDP|1|AA|A|182
6YDP|1|AA|A|183
6YDP|1|AA|A|184
6YDP|1|AA|A|185
6YDP|1|AA|U|186
*
6YDP|1|AA|A|212
6YDP|1|AA|G|213
6YDP|1|AA|U|214
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AP
- 28S ribosomal protein S16, mitochondrial
- Chain Ac
- Mitochondrial ribosomal protein S25
- Chain BC
- Elongation factor G, mitochondrial
Coloring options: