J3_6YDP_003

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UU*AAUAACC*GA

Length

11 nucleotides

Bulged bases

6YDP|1|AA|C|372

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|AA|U|326
6YDP|1|AA|U|327
*
6YDP|1|AA|A|367
6YDP|1|AA|A|368
6YDP|1|AA|U|369
6YDP|1|AA|A|370
6YDP|1|AA|A|371
6YDP|1|AA|C|372
6YDP|1|AA|C|373
*
6YDP|1|AA|G|383
6YDP|1|AA|A|384

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AF

bS6m

Chain AK

uS11m

Chain AR

Mitochondrial ribosomal protein S18C

Chain AU

bS21m

Chain Am

mS37