J3_6YDP_005

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAAUC*GAUAGACCUUAC*GAAA

Length

23 nucleotides

Bulged bases

6YDP|1|AA|U|580, 6YDP|1|AA|A|581, 6YDP|1|AA|G|582

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|AA|U|561
6YDP|1|AA|A|562
6YDP|1|AA|U|563
6YDP|1|AA|A|564
6YDP|1|AA|A|565
6YDP|1|AA|U|566
6YDP|1|AA|C|567
*
6YDP|1|AA|G|578
6YDP|1|AA|A|579
6YDP|1|AA|U|580
6YDP|1|AA|A|581
6YDP|1|AA|G|582
6YDP|1|AA|A|583
6YDP|1|AA|C|584
6YDP|1|AA|C|585
6YDP|1|AA|U|586
6YDP|1|AA|U|587
6YDP|1|AA|A|588
6YDP|1|AA|C|589
*
6YDP|1|AA|G|706
6YDP|1|AA|A|707
6YDP|1|AA|A|708
6YDP|1|AA|A|709

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14

Chain BC

Elongation factor G, mitochondrial