J3_6YDP_006

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

6YDP|1|AA|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YDP_006 not in the Motif Atlas

Geometric match to J3_5J7L_007

Geometric discrepancy: 0.196

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6YDP|1|AA|C|595
6YDP|1|AA|U|596
6YDP|1|AA|U|597
6YDP|1|AA|G|598
*
6YDP|1|AA|C|605
6YDP|1|AA|A|606
6YDP|1|AA|G|607
*
6YDP|1|AA|C|695
6YDP|1|AA|U|696
6YDP|1|AA|U|697
6YDP|1|AA|A|698
6YDP|1|AA|U|699
6YDP|1|AA|G|700

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33