J3_6YDP_008

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUUU*AUAUCCACCACAC*GGAG

Length

22 nucleotides

Bulged bases

6YDP|1|AA|U|724, 6YDP|1|AA|C|742, 6YDP|1|AA|A|743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|AA|C|721
6YDP|1|AA|A|722
6YDP|1|AA|U|723
6YDP|1|AA|U|724
6YDP|1|AA|U|725
*
6YDP|1|AA|A|737
6YDP|1|AA|U|738
6YDP|1|AA|A|739
6YDP|1|AA|U|740
6YDP|1|AA|C|741
6YDP|1|AA|C|742
6YDP|1|AA|A|743
6YDP|1|AA|C|744
6YDP|1|AA|C|745
6YDP|1|AA|A|746
6YDP|1|AA|C|747
6YDP|1|AA|A|748
6YDP|1|AA|C|749
*
6YDP|1|AA|G|778
6YDP|1|AA|G|779
6YDP|1|AA|A|780
6YDP|1|AA|G|781

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain Ag

Death associated protein 3

Chain Bd

Uncharacterized protein

Chain Bj

Mitochondrial ribosomal protein L46

Chain Bk

39S ribosomal protein L48, mitochondrial