J3_6YDP_011

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACGCUUA*UAACC*GAG

Length

16 nucleotides

Bulged bases

6YDP|1|BA|A|757

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|BA|C|669
6YDP|1|BA|A|670
6YDP|1|BA|C|671
6YDP|1|BA|G|672
6YDP|1|BA|C|673
6YDP|1|BA|U|674
6YDP|1|BA|U|675
6YDP|1|BA|A|676
*
6YDP|1|BA|U|755
6YDP|1|BA|A|756
6YDP|1|BA|A|757
6YDP|1|BA|C|758
6YDP|1|BA|C|759
*
6YDP|1|BA|G|768
6YDP|1|BA|A|769
6YDP|1|BA|G|770

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34

Chain BX

uL23m

Chain Be

Mitochondrial ribosomal protein L41

Chain Bw

39S ribosomal protein S30, mitochondrial