J3_6YDP_017
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAACAUACUAAACAAAUACAAAAAUACACCAAAAUAAAAUA*UCACCUAACA*UUAUCCUG
- Length
- 59 nucleotides
- Bulged bases
- 6YDP|1|BA|U|19, 6YDP|1|BA|A|20, 6YDP|1|BA|C|21, 6YDP|1|BA|U|22, 6YDP|1|BA|A|31, 6YDP|1|BA|A|33, 6YDP|1|BA|A|39, 6YDP|1|BA|C|40, 6YDP|1|BA|A|41, 6YDP|1|BA|A|45, 6YDP|1|BA|A|46, 6YDP|1|BA|A|47, 6YDP|1|BA|U|48, 6YDP|1|BA|U|66, 6YDP|1|BA|A|67, 6YDP|1|BA|U|96
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|BA|C|14
6YDP|1|BA|A|15
6YDP|1|BA|A|16
6YDP|1|BA|C|17
6YDP|1|BA|A|18
6YDP|1|BA|U|19
6YDP|1|BA|A|20
6YDP|1|BA|C|21
6YDP|1|BA|U|22
6YDP|1|BA|A|23
6YDP|1|BA|A|24
6YDP|1|BA|A|25
6YDP|1|BA|C|26
6YDP|1|BA|A|27
6YDP|1|BA|A|28
6YDP|1|BA|A|29
6YDP|1|BA|U|30
6YDP|1|BA|A|31
6YDP|1|BA|C|32
6YDP|1|BA|A|33
6YDP|1|BA|A|34
6YDP|1|BA|A|35
6YDP|1|BA|A|36
6YDP|1|BA|A|37
6YDP|1|BA|U|38
6YDP|1|BA|A|39
6YDP|1|BA|C|40
6YDP|1|BA|A|41
6YDP|1|BA|C|42
6YDP|1|BA|C|43
6YDP|1|BA|A|44
6YDP|1|BA|A|45
6YDP|1|BA|A|46
6YDP|1|BA|A|47
6YDP|1|BA|U|48
6YDP|1|BA|A|49
6YDP|1|BA|A|50
6YDP|1|BA|A|51
6YDP|1|BA|A|52
6YDP|1|BA|U|53
6YDP|1|BA|A|54
*
6YDP|1|BA|U|61
6YDP|1|BA|C|62
6YDP|1|BA|A|63
6YDP|1|BA|C|64
6YDP|1|BA|C|65
6YDP|1|BA|U|66
6YDP|1|BA|A|67
6YDP|1|BA|A|68
6YDP|1|BA|C|69
6YDP|1|BA|A|70
*
6YDP|1|BA|U|95
6YDP|1|BA|U|96
6YDP|1|BA|A|97
6YDP|1|BA|U|98
6YDP|1|BA|C|99
6YDP|1|BA|C|100
6YDP|1|BA|U|101
6YDP|1|BA|G|102
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B1
- Mitochondrial ribosomal protein L28
- Chain B2
- Mitochondrial ribosomal protein L47
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain B8
- Mitochondrial ribosomal protein L35
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BI
- Mitochondrial ribosomal protein L9
- Chain BP
- uL15m
- Chain BX
- uL23m
- Chain BY
- uL24m
- Chain Ba
- Mitochondrial ribosomal protein L37
- Chain Be
- Mitochondrial ribosomal protein L41
- Chain Bn
- Mitochondrial ribosomal protein L51
- Chain Bv
- mL64
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