J3_6YDP_018
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUAAAAUCUUAAUACUACCAUAG*CAAUUGAG*CAACAAAUUCACCAACAUAAUCCCAAAAACUAAUAACAAAC
- Length
- 72 nucleotides
- Bulged bases
- 6YDP|1|BA|A|493, 6YDP|1|BA|U|497, 6YDP|1|BA|U|553, 6YDP|1|BA|C|557, 6YDP|1|BA|C|561, 6YDP|1|BA|U|566, 6YDP|1|BA|A|574, 6YDP|1|BA|C|575, 6YDP|1|BA|U|576, 6YDP|1|BA|A|577, 6YDP|1|BA|U|579, 6YDP|1|BA|A|585
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|BA|G|482
6YDP|1|BA|U|483
6YDP|1|BA|A|484
6YDP|1|BA|A|485
6YDP|1|BA|A|486
6YDP|1|BA|A|487
6YDP|1|BA|U|488
6YDP|1|BA|C|489
6YDP|1|BA|U|490
6YDP|1|BA|U|491
6YDP|1|BA|A|492
6YDP|1|BA|A|493
6YDP|1|BA|U|494
6YDP|1|BA|A|495
6YDP|1|BA|C|496
6YDP|1|BA|U|497
6YDP|1|BA|A|498
6YDP|1|BA|C|499
6YDP|1|BA|C|500
6YDP|1|BA|A|501
6YDP|1|BA|U|502
6YDP|1|BA|A|503
6YDP|1|BA|G|504
*
6YDP|1|BA|C|524
6YDP|1|BA|A|525
6YDP|1|BA|A|526
6YDP|1|BA|U|527
6YDP|1|BA|U|528
6YDP|1|BA|G|529
6YDP|1|BA|A|530
6YDP|1|BA|G|531
*
6YDP|1|BA|C|546
6YDP|1|BA|A|547
6YDP|1|BA|A|548
6YDP|1|BA|C|549
6YDP|1|BA|A|550
6YDP|1|BA|A|551
6YDP|1|BA|A|552
6YDP|1|BA|U|553
6YDP|1|BA|U|554
6YDP|1|BA|C|555
6YDP|1|BA|A|556
6YDP|1|BA|C|557
6YDP|1|BA|C|558
6YDP|1|BA|A|559
6YDP|1|BA|A|560
6YDP|1|BA|C|561
6YDP|1|BA|A|562
6YDP|1|BA|U|563
6YDP|1|BA|A|564
6YDP|1|BA|A|565
6YDP|1|BA|U|566
6YDP|1|BA|C|567
6YDP|1|BA|C|568
6YDP|1|BA|C|569
6YDP|1|BA|A|570
6YDP|1|BA|A|571
6YDP|1|BA|A|572
6YDP|1|BA|A|573
6YDP|1|BA|A|574
6YDP|1|BA|C|575
6YDP|1|BA|U|576
6YDP|1|BA|A|577
6YDP|1|BA|A|578
6YDP|1|BA|U|579
6YDP|1|BA|A|580
6YDP|1|BA|A|581
6YDP|1|BA|C|582
6YDP|1|BA|A|583
6YDP|1|BA|A|584
6YDP|1|BA|A|585
6YDP|1|BA|C|586
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B3
- uL30m
- Chain B9
- Ribosomal protein
- Chain BE
- ICT1
- Chain BJ
- Mitochondrial ribosomal protein L10
- Chain BK
- Mitochondrial ribosomal protein L11
- Chain BN
- uL13m
- Chain BQ
- uL16m
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bo
- mL52
- Chain Bp
- mL53
- Chain Bq
- mL54
- Chain Bt
- Mitochondrial ribosomal protein L57
- Chain Bx
- Mitochondrial ribosomal protein S18A
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