J3_6YDW_010

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YDW_010 not in the Motif Atlas

Geometric match to J3_8VTW_002

Geometric discrepancy: 0.2312

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6YDW|1|BA|C|266
6YDW|1|BA|A|267
6YDW|1|BA|G|268
*
6YDW|1|BA|C|279
6YDW|1|BA|C|280
6YDW|1|BA|A|281
6YDW|1|BA|A|282
6YDW|1|BA|C|283
*
6YDW|1|BA|G|307
6YDW|1|BA|A|308
6YDW|1|BA|A|309
6YDW|1|BA|G|310

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BD

Uncharacterized protein

Chain Ba

Mitochondrial ribosomal protein L37