J3_6YDW_014
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CACC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6YDW|1|BA|A|1341, 6YDW|1|BA|C|1342
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YDW_014 not in the Motif Atlas
- Geometric match to J3_4WF9_009
- Geometric discrepancy: 0.1944
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6YDW|1|BA|C|1340
6YDW|1|BA|A|1341
6YDW|1|BA|C|1342
6YDW|1|BA|C|1343
*
6YDW|1|BA|G|1368
6YDW|1|BA|U|1369
6YDW|1|BA|U|1370
*
6YDW|1|BA|A|1384
6YDW|1|BA|U|1385
6YDW|1|BA|U|1386
6YDW|1|BA|A|1387
6YDW|1|BA|A|1388
6YDW|1|BA|A|1389
6YDW|1|BA|G|1390
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain BE
- ICT1
- Chain BO
- Uncharacterized protein
- Chain Bt
- Mitochondrial ribosomal protein L57
- Chain Bx
- Mitochondrial ribosomal protein S18A
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