J3_6YDW_015

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

6YDW|1|AA|A|822

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YDW_015 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4461

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6YDW|1|AA|C|542
6YDW|1|AA|A|543
6YDW|1|AA|C|544
6YDW|1|AA|C|545
*
6YDW|1|AA|G|788
6YDW|1|AA|C|789
6YDW|1|AA|A|790
6YDW|1|AA|G|791
6YDW|1|AA|U|792
6YDW|1|AA|A|793
6YDW|1|AA|A|794
*
6YDW|1|AA|U|816
6YDW|1|AA|G|817
6YDW|1|AA|A|818
6YDW|1|AA|A|819
6YDW|1|AA|U|820
6YDW|1|AA|A|821
6YDW|1|AA|A|822
6YDW|1|AA|G|823

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AG

Mitochondrial ribosomal protein S7

Chain AI

Uncharacterized protein

Chain Am

mS37