J3_6YEF_007

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6YEF|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YEF_007 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0803

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6YEF|1|A|C|1342
6YEF|1|A|U|1343
6YEF|1|A|A|1344
6YEF|1|A|A|1345
6YEF|1|A|G|1346
*
6YEF|1|A|C|1649
6YEF|1|A|G|1650
6YEF|1|A|C|1651
6YEF|1|A|A|1652
6YEF|1|A|A|1653
6YEF|1|A|A|1654
6YEF|1|A|C|1655
*
6YEF|1|A|G|1664
6YEF|1|A|U|1665
6YEF|1|A|A|1666
6YEF|1|A|G|1667

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34