J3_6YEF_009
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUC*GAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 6YEF|1|A|U|2361, 6YEF|1|A|A|2363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_009 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.1434
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6YEF|1|A|C|2322
6YEF|1|A|U|2323
6YEF|1|A|C|2324
*
6YEF|1|A|G|2348
6YEF|1|A|A|2349
6YEF|1|A|G|2350
*
6YEF|1|A|C|2359
6YEF|1|A|A|2360
6YEF|1|A|U|2361
6YEF|1|A|A|2362
6YEF|1|A|A|2363
6YEF|1|A|G|2364
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 50S ribosomal protein L5
- Chain R
- 50S ribosomal protein L18
- Chain Z
- 50S ribosomal protein L27
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