J3_6YEF_010

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6YEF|1|A|A|2545, 6YEF|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YEF_010 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1003

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6YEF|1|A|C|2544
6YEF|1|A|A|2545
6YEF|1|A|U|2546
6YEF|1|A|C|2547
*
6YEF|1|A|G|2572
6YEF|1|A|U|2573
6YEF|1|A|U|2574
*
6YEF|1|A|A|2588
6YEF|1|A|U|2589
6YEF|1|A|U|2590
6YEF|1|A|A|2591
6YEF|1|A|A|2592
6YEF|1|A|A|2593
6YEF|1|A|G|2594

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L14