J3_6YEF_011

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CA*UAUAAG*CGAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YEF_011 not in the Motif Atlas

Homologous match to J3_7RQB_013

Geometric discrepancy: 0.3308

The information below is about J3_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24416.1

Basepair signature

cWW-F-F-tWH-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6YEF|1|A|C|2816
6YEF|1|A|A|2817
*
6YEF|1|A|U|2826
6YEF|1|A|A|2827
6YEF|1|A|U|2828
6YEF|1|A|A|2829
6YEF|1|A|A|2830
6YEF|1|A|G|2831
*
6YEF|1|A|C|2909
6YEF|1|A|G|2910
6YEF|1|A|A|2911
6YEF|1|A|A|2912
6YEF|1|A|G|2913

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3