J3_6YEF_019
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6YEF|1|a|A|984, 6YEF|1|a|G|985, 6YEF|1|a|A|987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_019 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0893
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
6YEF|1|a|U|964
6YEF|1|a|U|965
6YEF|1|a|U|966
6YEF|1|a|A|967
6YEF|1|a|A|968
6YEF|1|a|U|969
6YEF|1|a|U|970
6YEF|1|a|C|971
*
6YEF|1|a|G|982
6YEF|1|a|A|983
6YEF|1|a|A|984
6YEF|1|a|G|985
6YEF|1|a|A|986
6YEF|1|a|A|987
6YEF|1|a|C|988
6YEF|1|a|C|989
6YEF|1|a|U|990
6YEF|1|a|U|991
6YEF|1|a|A|992
6YEF|1|a|C|993
*
6YEF|1|a|G|1231
6YEF|1|a|G|1232
6YEF|1|a|C|1233
6YEF|1|a|U|1234
6YEF|1|a|A|1235
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- ribosomal protein uS10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
Coloring options: