J3_6YEF_020
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUG*CAG*CUUAUG
- Length
- 13 nucleotides
- Bulged bases
- 6YEF|1|a|U|1224
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_020 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.1765
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84394.1
- Basepair signature
- cWW-tWH-F-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6YEF|1|a|C|999
6YEF|1|a|U|1000
6YEF|1|a|U|1001
6YEF|1|a|G|1002
*
6YEF|1|a|C|1056
6YEF|1|a|A|1057
6YEF|1|a|G|1058
*
6YEF|1|a|C|1220
6YEF|1|a|U|1221
6YEF|1|a|U|1222
6YEF|1|a|A|1223
6YEF|1|a|U|1224
6YEF|1|a|G|1225
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain n
- 30S ribosomal protein S14
Coloring options: