J3_6YEF_022
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_022 not in the Motif Atlas
- Homologous match to J3_4LFB_007
- Geometric discrepancy: 0.1137
- The information below is about J3_4LFB_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01343.1
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6YEF|1|a|C|1074
6YEF|1|a|G|1075
6YEF|1|a|U|1076
6YEF|1|a|C|1077
6YEF|1|a|A|1078
6YEF|1|a|G|1079
*
6YEF|1|a|C|1118
6YEF|1|a|G|1119
6YEF|1|a|C|1120
6YEF|1|a|A|1121
6YEF|1|a|A|1122
6YEF|1|a|C|1123
6YEF|1|a|C|1124
*
6YEF|1|a|G|1197
6YEF|1|a|A|1198
6YEF|1|a|U|1199
6YEF|1|a|G|1200
6YEF|1|a|A|1201
6YEF|1|a|C|1202
6YEF|1|a|G|1203
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain c
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S5
- Chain i
- 30S ribosomal protein S9
- Chain j
- ribosomal protein uS10
- Chain n
- 30S ribosomal protein S14
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