J3_6YEF_030

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YEF_030 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0874

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6YEF|1|A|G|1468
6YEF|1|A|G|1469
6YEF|1|A|G|1470
6YEF|1|A|A|1471
6YEF|1|A|C|1472
6YEF|1|A|G|1473
*
6YEF|1|A|C|1611
6YEF|1|A|C|1612
*
6YEF|1|A|G|1615
6YEF|1|A|A|1616
6YEF|1|A|A|1617
6YEF|1|A|A|1618
6YEF|1|A|A|1619
6YEF|1|A|G|1620
6YEF|1|A|C|1621

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L2