J3_6YEF_033
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCCUAAU*AGGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 6YEF|1|a|C|49, 6YEF|1|a|A|51, 6YEF|1|a|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_033 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.1143
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YEF|1|a|G|47
6YEF|1|a|C|48
6YEF|1|a|C|49
6YEF|1|a|U|50
6YEF|1|a|A|51
6YEF|1|a|A|52
6YEF|1|a|U|53
*
6YEF|1|a|A|367
6YEF|1|a|G|368
6YEF|1|a|G|369
6YEF|1|a|G|370
6YEF|1|a|A|371
6YEF|1|a|A|372
6YEF|1|a|U|373
6YEF|1|a|C|374
6YEF|1|a|U|375
*
6YEF|1|a|A|401
6YEF|1|a|G|402
6YEF|1|a|C|403
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
Coloring options: