J3_6YEF_036
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YEF_036 not in the Motif Atlas
- Homologous match to J3_5J7L_052
- Geometric discrepancy: 0.0936
- The information below is about J3_5J7L_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YEF|1|a|C|945
6YEF|1|a|A|946
6YEF|1|a|A|947
6YEF|1|a|G|948
*
6YEF|1|a|C|1354
6YEF|1|a|U|1355
6YEF|1|a|A|1356
6YEF|1|a|G|1357
6YEF|1|a|U|1358
6YEF|1|a|A|1359
6YEF|1|a|A|1360
*
6YEF|1|a|U|1382
6YEF|1|a|G|1383
6YEF|1|a|A|1384
6YEF|1|a|A|1385
6YEF|1|a|U|1386
6YEF|1|a|A|1387
6YEF|1|a|C|1388
6YEF|1|a|G|1389
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
Coloring options: