J3_6YHS_001

3D structure

PDB id

6YHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Acinetobacter baumannii ribosome-amikacin complex - 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YHS_001 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.0821

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

6YHS|1|1|G|30
6YHS|1|1|C|31
*
6YHS|1|1|G|466
6YHS|1|1|C|467
6YHS|1|1|G|468
6YHS|1|1|A|469
6YHS|1|1|A|470
6YHS|1|1|A|471
6YHS|1|1|A|472
6YHS|1|1|G|473
*
6YHS|1|1|C|501
6YHS|1|1|C|502

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L20

Chain Q

50S ribosomal protein L24