J3_6YHS_009
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUG*CUAAC*GGACCG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YHS_009 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.0732
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6YHS|1|1|C|2080
6YHS|1|1|U|2081
6YHS|1|1|G|2082
*
6YHS|1|1|C|2185
6YHS|1|1|U|2186
6YHS|1|1|A|2187
6YHS|1|1|A|2188
6YHS|1|1|C|2189
*
6YHS|1|1|G|2212
6YHS|1|1|G|2213
6YHS|1|1|A|2214
6YHS|1|1|C|2215
6YHS|1|1|C|2216
6YHS|1|1|G|2217
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
- Chain T
- 50S ribosomal protein L28
Coloring options: