J3_6YHS_018
3D structure
- PDB id
- 6YHS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Acinetobacter baumannii ribosome-amikacin complex - 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGGACG*CC*GAAAAGU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YHS_018 not in the Motif Atlas
- Homologous match to J3_7A0S_019
- Geometric discrepancy: 0.1183
- The information below is about J3_7A0S_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6YHS|1|1|A|1412
6YHS|1|1|G|1413
6YHS|1|1|G|1414
6YHS|1|1|A|1415
6YHS|1|1|C|1416
6YHS|1|1|G|1417
*
6YHS|1|1|C|1555
6YHS|1|1|C|1556
*
6YHS|1|1|G|1559
6YHS|1|1|A|1560
6YHS|1|1|A|1561
6YHS|1|1|A|1562
6YHS|1|1|A|1563
6YHS|1|1|G|1564
6YHS|1|1|U|1565
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain A
- 50S ribosomal protein L2
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