J3_6YLG_007
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YLG_007 not in the Motif Atlas
- Homologous match to J3_5TBW_007
- Geometric discrepancy: 0.2278
- The information below is about J3_5TBW_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.3
- Basepair signature
- cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YLG|1|1|G|1230
6YLG|1|1|A|1231
6YLG|1|1|C|1232
*
6YLG|1|1|G|1256
6YLG|1|1|C|1257
6YLG|1|1|U|1258
6YLG|1|1|A|1259
6YLG|1|1|A|1260
6YLG|1|1|G|1261
6YLG|1|1|G|1262
*
6YLG|1|1|C|1277
6YLG|1|1|A|1278
6YLG|1|1|C|1279
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain W
- Ribosome assembly factor MRT4
- Chain q
- 60S ribosomal protein L12-A
- Chain r
- Ribosome biogenesis protein NSA2
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