3D structure

PDB id
6YLG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUC*GAA*UAAAAG
Length
12 nucleotides
Bulged bases
6YLG|1|1|A|2703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YLG_014 not in the Motif Atlas
Homologous match to J3_8C3A_010
Geometric discrepancy: 0.1185
The information below is about J3_8C3A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

6YLG|1|1|C|2664
6YLG|1|1|U|2665
6YLG|1|1|C|2666
*
6YLG|1|1|G|2690
6YLG|1|1|A|2691
6YLG|1|1|A|2692
*
6YLG|1|1|U|2701
6YLG|1|1|A|2702
6YLG|1|1|A|2703
6YLG|1|1|A|2704
6YLG|1|1|A|2705
6YLG|1|1|G|2706

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain 5
rRNA-processing protein CGR1
Chain D
60S ribosomal protein L5
Chain J
60S ribosomal protein L11-A
Chain T
60S ribosomal protein L21-A
Chain t
Protein SDA1

Coloring options:


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