J3_6YLG_014
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6YLG|1|1|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YLG_014 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1185
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YLG|1|1|C|2664
6YLG|1|1|U|2665
6YLG|1|1|C|2666
*
6YLG|1|1|G|2690
6YLG|1|1|A|2691
6YLG|1|1|A|2692
*
6YLG|1|1|U|2701
6YLG|1|1|A|2702
6YLG|1|1|A|2703
6YLG|1|1|A|2704
6YLG|1|1|A|2705
6YLG|1|1|G|2706
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain 5
- rRNA-processing protein CGR1
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11-A
- Chain T
- 60S ribosomal protein L21-A
- Chain t
- Protein SDA1
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