J3_6YLG_021
3D structure
- PDB id
- 6YLG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - 60S core, body 1 (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6YLG|1|1|A|398, 6YLG|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YLG_021 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0767
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6YLG|1|1|A|369
6YLG|1|1|U|370
6YLG|1|1|G|371
6YLG|1|1|A|372
6YLG|1|1|A|373
6YLG|1|1|A|374
6YLG|1|1|A|375
6YLG|1|1|G|376
6YLG|1|1|A|377
6YLG|1|1|A|378
6YLG|1|1|C|379
*
6YLG|1|1|G|390
6YLG|1|1|A|391
6YLG|1|1|G|392
6YLG|1|1|U|393
6YLG|1|1|G|394
6YLG|1|1|A|395
6YLG|1|1|A|396
6YLG|1|1|A|397
6YLG|1|1|A|398
6YLG|1|1|A|399
6YLG|1|1|G|400
6YLG|1|1|U|401
6YLG|1|1|A|402
6YLG|1|1|C|403
6YLG|1|1|G|404
*
6YLG|1|2|C|19
6YLG|1|2|U|20
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 4
- Probable metalloprotease ARX1
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain c
- Ribosome biogenesis protein ALB1
- Chain l
- 60S ribosomal protein L39
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