J3_6YLH_023
3D structure
- PDB id
- 6YLH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rix1-Rea1 pre-60S particle - full composite structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGACG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YLH_023 not in the Motif Atlas
- Homologous match to J3_8P9A_058
- Geometric discrepancy: 0.0774
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6YLH|1|1|A|1654
6YLH|1|1|G|1655
6YLH|1|1|A|1656
6YLH|1|1|C|1657
6YLH|1|1|G|1658
*
6YLH|1|1|C|1791
6YLH|1|1|C|1792
*
6YLH|1|1|G|1796
6YLH|1|1|A|1797
6YLH|1|1|A|1798
6YLH|1|1|A|1799
6YLH|1|1|A|1800
6YLH|1|1|U|1801
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain g
- 60S ribosomal protein L34-A
- Chain p
- 60S ribosomal protein L43-A
Coloring options: