J3_6YLX_005

3D structure

PDB id

6YLX (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE1 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

6YLX|1|1|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YLX_005 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.1971

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6YLX|1|1|A|828
6YLX|1|1|U|829
6YLX|1|1|A|830
6YLX|1|1|G|831
*
6YLX|1|1|C|863
6YLX|1|1|G|864
6YLX|1|1|U|865
6YLX|1|1|A|866
6YLX|1|1|G|867
*
6YLX|1|1|U|892
6YLX|1|1|C|893
6YLX|1|1|G|894
6YLX|1|1|A|895
6YLX|1|1|A|896
6YLX|1|1|U|897

Current chains

Chain 1

25S rRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain g

60S ribosomal protein L34-A