3D structure

PDB id
6YLX (explore in PDB, NAKB, or RNA 3D Hub)
Description
pre-60S State NE1 (TAP-Flag-Nop53)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGACG*CC*GAAAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6YLX_020 not in the Motif Atlas
Homologous match to J3_8C3A_055
Geometric discrepancy: 0.1068
The information below is about J3_8C3A_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_10980.1
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-cWW
Number of instances in this motif group
3

Unit IDs

6YLX|1|1|A|1654
6YLX|1|1|G|1655
6YLX|1|1|A|1656
6YLX|1|1|C|1657
6YLX|1|1|G|1658
*
6YLX|1|1|C|1791
6YLX|1|1|C|1792
*
6YLX|1|1|G|1796
6YLX|1|1|A|1797
6YLX|1|1|A|1798
6YLX|1|1|A|1799
6YLX|1|1|A|1800
6YLX|1|1|U|1801

Current chains

Chain 1
25S rRNA

Nearby chains

Chain g
60S ribosomal protein L34-A
Chain n
Pescadillo homolog

Coloring options:


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