J3_6YLY_006

3D structure

PDB id

6YLY (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-60S State NE2 (TAP-Flag-Nop53)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GCUAAGGAGUG*CUCAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YLY|1|1|G|1230
6YLY|1|1|A|1231
6YLY|1|1|C|1232
*
6YLY|1|1|G|1256
6YLY|1|1|C|1257
6YLY|1|1|U|1258
6YLY|1|1|A|1259
6YLY|1|1|A|1260
6YLY|1|1|G|1261
6YLY|1|1|G|1262
6YLY|1|1|A|1263
6YLY|1|1|G|1264
6YLY|1|1|U|1265
6YLY|1|1|G|1266
*
6YLY|1|1|C|1275
6YLY|1|1|U|1276
6YLY|1|1|C|1277
6YLY|1|1|A|1278
6YLY|1|1|C|1279

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4