J3_6YLY_022
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAU
- Length
- 32 nucleotides
- Bulged bases
- 6YLY|1|1|A|3172, 6YLY|1|1|G|3173, 6YLY|1|1|A|3215, 6YLY|1|1|G|3216, 6YLY|1|1|G|3219, 6YLY|1|1|A|3268, 6YLY|1|1|U|3270, 6YLY|1|1|C|3272, 6YLY|1|1|U|3275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YLY|1|1|A|3170
6YLY|1|1|U|3171
6YLY|1|1|A|3172
6YLY|1|1|G|3173
6YLY|1|1|A|3174
6YLY|1|1|U|3175
6YLY|1|1|G|3176
*
6YLY|1|1|C|3212
6YLY|1|1|A|3213
6YLY|1|1|U|3214
6YLY|1|1|A|3215
6YLY|1|1|G|3216
6YLY|1|1|C|3217
6YLY|1|1|A|3218
6YLY|1|1|G|3219
6YLY|1|1|G|3220
*
6YLY|1|1|C|3265
6YLY|1|1|G|3266
6YLY|1|1|A|3267
6YLY|1|1|A|3268
6YLY|1|1|U|3269
6YLY|1|1|U|3270
6YLY|1|1|G|3271
6YLY|1|1|C|3272
6YLY|1|1|A|3273
6YLY|1|1|A|3274
6YLY|1|1|U|3275
6YLY|1|1|G|3276
6YLY|1|1|U|3277
6YLY|1|1|C|3278
6YLY|1|1|A|3279
6YLY|1|1|U|3280
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- 60S ribosomal protein L16-A
- Chain P
- 60S ribosomal protein L17-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: