J3_6YLY_025
3D structure
- PDB id
- 6YLY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-60S State NE2 (TAP-Flag-Nop53)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGG*CCACCAU
- Length
- 24 nucleotides
- Bulged bases
- 6YLY|1|1|C|1556, 6YLY|1|1|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6YLY_025 not in the Motif Atlas
- Homologous match to J3_8CRE_016
- Geometric discrepancy: 0.57
- The information below is about J3_8CRE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_65403.1
- Basepair signature
- cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6YLY|1|1|A|1537
6YLY|1|1|G|1538
6YLY|1|1|A|1539
6YLY|1|1|U|1540
6YLY|1|1|G|1541
6YLY|1|1|G|1542
*
6YLY|1|1|C|1551
6YLY|1|1|G|1552
6YLY|1|1|U|1553
6YLY|1|1|U|1554
6YLY|1|1|U|1555
6YLY|1|1|C|1556
6YLY|1|1|A|1557
6YLY|1|1|A|1558
6YLY|1|1|A|1559
6YLY|1|1|G|1560
6YLY|1|1|G|1561
*
6YLY|1|1|C|1578
6YLY|1|1|C|1579
6YLY|1|1|A|1580
6YLY|1|1|C|1581
6YLY|1|1|C|1582
6YLY|1|1|A|1583
6YLY|1|1|U|1584
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
- Chain j
- 60S ribosomal protein L37-A
- Chain n
- Pescadillo homolog
- Chain q
- Ribosome biogenesis protein NOP53
Coloring options: