J3_6YS3_016

3D structure

PDB id

6YS3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.58 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6YS3_016 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.565

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

6YS3|1|b|U|1346
6YS3|1|b|C|1347
6YS3|1|b|G|1348
6YS3|1|b|A|1349
6YS3|1|b|C|1350
6YS3|1|b|C|1351
6YS3|1|b|C|1352
*
6YS3|1|b|G|1383
6YS3|1|b|G|1384
6YS3|1|b|A|1385
6YS3|1|b|A|1386
6YS3|1|b|A|1387
*
6YS3|1|b|U|1404
6YS3|1|b|A|1405

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23